category
bioRxiv
date
Feb 20, 2026
slug
status
Published
summary
提出基于洗牌归一化的序列电荷/疏水性装饰度计算方法,开发结合多重指标的蒙特卡洛序列设计算法,通过粗粒度模拟验证设计序列的可调控相行为,为IDP理性设计提供新策略。
tags
蛋白质组学
合成生物学
type
Post
📄 原文题目
Analysis and design of disordered polypeptides with optimized sequence patterning properties
🔗 原文链接
💡 AI 核心解读
提出基于洗牌归一化的序列电荷/疏水性装饰度计算方法,开发结合多重指标的蒙特卡洛序列设计算法,通过粗粒度模拟验证设计序列的可调控相行为,为IDP理性设计提供新策略。
📝 英文原版摘要
Intrinsically disordered proteins (IDPs) exhibit phase separation behavior that is closely linked to their degree of single-chain compaction, which in turn is governed by both amino acid composition and sequence patterning. Existing metrics such as sequence charge decoration (SCD) and sequence hydropathy decoration (SHD) describe these effects but are largely limited to describing differences between sequences of similar length and overall composition. In this work, we present a shuffle-based normalization scheme for SCD and SHD, enabling comparison of sequence patterning between very different IDP sequences. Leveraging this normalization scheme toward design space, we develop a Monte Carlo, based sequence design algorithm that generates novel IDPs with desired patterning features. Our design framework is further strengthened by incorporating additional metrics such as sequence aromatic decoration (SAD), compositional RMSD, and a previously developed sequence based {Delta}G predictor. We validate our approach through coarse-grained MD simulations, showing that the designed sequences exhibit tunable phase behavior. This strategy lays the groundwork for rational design of IDPs for biomedical and biotechnology applications, as well as basic biophysical research.
- 作者:NotionNext
- 链接:https://tangly1024.com/article/30e48bd6-1f96-8148-ac47-e91778fa882e
- 声明:本文采用 CC BY-NC-SA 4.0 许可协议,转载请注明出处。
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