category
bioRxiv
date
Feb 25, 2026
slug
status
Published
summary
首次系统评估领域适应方法与简单基线模型在单细胞药物敏感性预测中的表现,发现复杂模型未超越简单方法;揭示目标数据驱动的超参数优化和稀疏标签监督是提升预测性能的关键因素;提供统一代码库和跨19个单细胞数据集的基准测试资源。
tags
单细胞测序
type
Post
📄 原文题目
Domain-adaptation deep learning models do not outperform simple baseline models in single-cell anti-cancer drug sensitivity prediction
🔗 原文链接
💡 AI 核心解读
首次系统评估领域适应方法与简单基线模型在单细胞药物敏感性预测中的表现,发现复杂模型未超越简单方法;揭示目标数据驱动的超参数优化和稀疏标签监督是提升预测性能的关键因素;提供统一代码库和跨19个单细胞数据集的基准测试资源。
📝 英文原版摘要
Tumor drug response is profoundly shaped by cellular heterogeneity, making single-cell resolution essential for precision oncology. While drug-response labels are abundant for cell lines at bulk resolution, translating these predictive models to the single-cell level requires effective domain adaptation strategies. Motivated by advances in computer vision, recent deep-learning domain adaptation methods promise to transfer knowledge from bulk (source) to single-cell (target) data without the need for target labels. However, their true translational utility remains unclear due to a lack of rigorous evaluation against non-adaptive baselines across diverse biological and technical contexts. Here, we present a comprehensive benchmark comparing four representative domain adaptation methods against two simple gradient boosting baseline methods. Through systematic evaluation across 19 single-cell datasets and 10 drugs, we show that none of the complex adaptation methods outperforms the simpler baselines. By analyzing the drivers of model performance, we find that target-informed hyperparameter tuning and sparse label supervision are the principal sources of prediction gain. Our study reveals that current approaches fail to bridge the bulk-to-single-cell conceptual shift and provides a unified codebase and comprehensive data collection to facilitate robust model comparisons. By enabling transparent evaluation and robust benchmarking against simple models, this resource aims to accelerate future developments in translational pharmacogenomics.
- 作者:NotionNext
- 链接:https://tangly1024.com/article/31348bd6-1f96-8169-9325-ebd01f3aa3db
- 声明:本文采用 CC BY-NC-SA 4.0 许可协议,转载请注明出处。
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