category
bioRxiv
date
Mar 1, 2026
slug
status
Published
summary
创新点包括:1) 通过LLM选择预验证工具模式而非生成自由代码,确保分析可重复性;2) 基于Model Context Protocol整合60+方法跨越Python/R生态;3) 实现跨平台验证与多步骤分析的确定性复现;4) 支持跨方法框架的探索性分析验证。
tags
空间组学
type
Post

📄 原文题目

ChatSpatial: Schema-Enforced Agentic Orchestration for Reproducible and Cross-Platform Spatial Transcriptomics

🔗 原文链接

💡 AI 核心解读

创新点包括:1) 通过LLM选择预验证工具模式而非生成自由代码,确保分析可重复性;2) 基于Model Context Protocol整合60+方法跨越Python/R生态;3) 实现跨平台验证与多步骤分析的确定性复现;4) 支持跨方法框架的探索性分析验证。

📝 英文原版摘要

Spatial transcriptomics has transformed our ability to study tissue architecture at molecular resolution, yet analyzing these data demands navigating dozens of computational methods across incompatible Python and R ecosystems---forcing researchers to devote more effort to making tools function than to pursuing biological questions. We present ChatSpatial, a platform in which the LLM selects from pre-validated tool schemas rather than generating free-form code, with domain expertise embedded in schema descriptions for context-aware parameter inference. Built on the Model Context Protocol (MCP), ChatSpatial unifies 60+ methods across 15 analytical categories into a single conversational workflow spanning Python and R ecosystems. Replication of two published studies---recovering subclonal heterogeneity in ovarian cancer and tumor microenvironment organization in oral squamous cell carcinoma---and validation across seven LLM platforms demonstrate that schema-enforced orchestration yields near-deterministic reproducibility at the workflow level for multi-step spatial analyses. Beyond replication, exploratory cross-method analyses illustrate practical triangulation across independent analytical frameworks.
识别免疫细胞类型比例的遗传调控及其对自身免疫疾病的影响结肠炎诱发的内脏痛募集中枢神经紧张素神经元调节结肠敏感性
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