category
bioRxiv
date
Mar 9, 2026
slug
status
Published
summary
创新点包括:1) 提出适应性稀疏多块PLS-DA模型,整合人类伪批量表达数据、一对一同源性和细胞类型映射;2) 开发可视化工具singIST Visualizer,支持交互式探索和自动化图表生成;3) 实现疾病模型与人类参考数据的跨物种转录组学比较分析。
tags
单细胞测序
type
Post
📄 原文题目
singIST: an R/Bioconductor library and Quarto dashboard for automated single-cell comparative transcriptomics analysis ofdisease models and humans
🔗 原文链接
💡 AI 核心解读
创新点包括:1) 提出适应性稀疏多块PLS-DA模型,整合人类伪批量表达数据、一对一同源性和细胞类型映射;2) 开发可视化工具singIST Visualizer,支持交互式探索和自动化图表生成;3) 实现疾病模型与人类参考数据的跨物种转录组学比较分析。
📝 英文原版摘要
Preclinical disease models often diverge from human pathophysiology at single-cell resolution, complicating model selection and limiting translational value. We present singIST, an R/Bioconductor package for quantitative and explainable comparison of disease model scRNA-seq data against a human reference. For each superpathway, singIST fits an adaptive sparse multi-block PLS-DA model on human pseudobulk expression, integrated one-to-one orthology and cell type mapping, and translates model fold changes into the human expression space to compute signed recapitulation at the superpathway, cell type, and gene levels. To streamline interpretation and reporting, we provide singIST Visualizer, a companion Quarto/Shiny dashboard that loads singIST outputs and offers interactive exploration with export ready plots and tables, avoiding manual figure coding across many superpathways and models. We demonstrate the workflow. We illustrate an end-to-end workflow on an oxazolone mouse model against a human atopic dermatitis reference for two representative pathways: Dendritic Cells in regulating Th1/Th2 Development [BIOCARTA] and Cytokine-cytokine receptor interaction [KEGG]. singIST is distributed under the MIT License via Bioconductor, and the Visualizer is available on GitHub.
- 作者:NotionNext
- 链接:https://tangly1024.com/article/31e48bd6-1f96-8129-93f5-e76b65b9131e
- 声明:本文采用 CC BY-NC-SA 4.0 许可协议,转载请注明出处。
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