category
bioRxiv
date
Mar 13, 2026
slug
status
Published
summary
1. 揭示了芳香族中心基序的膜插入序列规则;2. 开发了AroMIP预测模型(准确率91.2%-99.7%);3. 提供了IDP通过芳香族基序驱动膜插入的机制解释。
tags
蛋白质组学
type
Post

📄 原文题目

A membrane insertion code for intrinsically disordered proteins

🔗 原文链接

💡 AI 核心解读

1. 揭示了芳香族中心基序的膜插入序列规则;2. 开发了AroMIP预测模型(准确率91.2%-99.7%);3. 提供了IDP通过芳香族基序驱动膜插入的机制解释。

📝 英文原版摘要

Membrane association of intrinsically disordered proteins (IDPs) mediates various cellular functions including membrane remodeling and signal transduction. Whereas membrane association through amphipathic helices and polybasic motifs is well understood, sequence determinants for deep membrane insertion of aromatic residues are still poorly characterized. Here, we decipher the sequence code for membrane insertion of aromatic-centered motifs. For an initial set of 10 9-residue aromatic-centered sequences, all-atom molecular dynamics simulations and the positioning of proteins in membranes (PPM) method produced very similar membrane insertion propensities. Applying PPM to a full library of 1.2 x 106 sequences with an F, W, or Y residue flanked by L, R, G, N, or E at four positions on either side, we found that aliphatic (L) and basic (R) residues favor membrane insertion, whereas acidic (E) and polar (N) residues disfavor it. Guided by these rules, we developed a mathematical model dubbed AroMIP to predict the membrane insertion propensities of aromatic-centered motifs. AroMIP achieves 91.2%, 92.0%, and 99.7% accuracies for F-, W-, and Y-centered motifs, respectively, in disordered regions of the human proteome and is available as a web server at https://zhougroup-uic.github.io/AroMIP/. The present work provides the sequence basis and a mechanistic understanding of how IDPs employ aromatic-centered motifs to drive membrane insertion, and enriches the tools for the study of IDP-membrane association.
基于酶促比色编码的数字医学在胰腺癌诊断中的应用乙醇摄入涉及雄性Wistar大鼠的星形胶质细胞
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