category
bioRxiv
date
Mar 10, 2026
slug
status
Published
summary
开发了包含残基级脱溶剂化能量项的粗粒化模型,揭示脱溶剂化能如何调控相分离热力学和动力学,发现温度间隙与构象压缩的线性关系,并阐明脱溶剂化屏障对凝聚体成熟过程的双重影响。
tags
蛋白质组学
type
Post

📄 原文题目

Role of desolvation on biomolecular liquid-liquid phase separation

🔗 原文链接

💡 AI 核心解读

开发了包含残基级脱溶剂化能量项的粗粒化模型,揭示脱溶剂化能如何调控相分离热力学和动力学,发现温度间隙与构象压缩的线性关系,并阐明脱溶剂化屏障对凝聚体成熟过程的双重影响。

📝 英文原版摘要

Biomolecular condensates play essential roles in cellular organization and are implicated in diverse pathological processes. Their formation is driven by liquid-liquid phase separation (LLPS), a process that requires coordinated multistep desolvation of biomolecular chains and multivalent inter-chain interactions. Although coarse-grained (CG) models with implicit solvent are widely used to probe LLPS thermodynamics and kinetics, they typically neglect explicit desolvation energetics, limiting their accuracy and mechanistic interpretability. Here, guided by all-atom simulations and experimental measurements, we develop a CG model that incorporates residue-level desolvation terms directly into the energy function and apply it to investigate LLPS of intrinsically disordered proteins. Incorporating explicit desolvation reshapes the phase diagram, yielding improved predictions of dense-phase packing density. Strikingly, we uncover a linear relationship between the temperature gap (simulation temperature relative to the critical point) and the extent of conformational compaction accompanying the dilute-to-dense phase transition, a result further supported by theoretical analysis. We also find that desolvation barriers accelerate early-stage coarsening dynamics while slowing chain mobility within mature condensates, whereas solvent-separated contact interactions exert the opposite effects. Together, this framework enables efficient and explicit treatment of desolvation in CG simulations and reveals how desolvation energetics shape both the thermodynamic landscape and kinetic property of biomolecular LLPS.
分子胶诱导的同源二聚体化驱动靶向CRBN自降解磁性DNA折纸纳米马达
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