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📄 原文题目

An Adenine-Based Molecular Rotor as a Universal Fluorescent Nucleobase with High Brightness

🔗 原文链接

💡 AI 核心解读

提出了一种新型腺嘌呤衍生物oxo-AdeBZT,其具有高亮度(摩尔消光系数37000 M-1*cm-1,量子产率0.11-0.27),在寡核苷酸和DNA双链中均表现出优异荧光性能;通过分子动力学模拟揭示其通过疏水相互作用和构象变化实现通用杂交特性,熔解温度变化不超过10%。

📝 英文原版摘要

Chemically modified nucleic acids have become a powerful platform for basic research and applied technologies. Universal nucleobases are used in PCR,sequencing, and the design of nanodevices and aptamers. Fluorescent universal nucleobases have an even wider range of applications, including the development of nucleic acid-based sensors, switches, and relay logic gates. However, few such nucleobases have been proposed to date, and most of them have suboptimal optical properties. Here, we propose an adenine-based molecular rotor, 7,8-dihydro-8-oxo-6-(3-methylbenzo[d]thiazol-2(3H)-ylidene)adenine (oxo-AdeBZT), as a new, remarkably bright and potent fluorescent universal nucleobase. Its brightness in both oligodeoxyribonucleotides (ODNs) and DNA duplexes (4200 - 10000 M-1 * cm-1) originates from a high molar extinction coefficient (averaged 37000 M-1 * cm-1), provided by the appended 3-methylbenzo[d]thiazolyl moiety, and a relatively high quantum yield (0.11 - 0.27). Melting temperature variations observed upon the incorporation of oxo-AdeBZT opposite native nucleobases in a duplex context did not exceed 10%. The basis of these universal hybridizing properties was unveiled using computational methods. According to molecular dynamics simulations, oxo-AdeBZT pushes the opposite nucleobase out of the DNA double helix and forms multiple hydrophobic contacts with the flanking base pairs. At the same time, the rotational mobility of the bonds between the oxo-AdeBZT-constituting heterobicycles decreases, and oxo-AdeBZT adopts a planar conformation in both ODNs and their duplexes, resulting in the light-up effect. These properties make oxo-AdeBZT a promising molecular tool for analytical, biophysical and biochemical studies.
金黄色葡萄球菌A类分选酶P94位点的氨基酸变异调控底物结合和酶活性用于优化细菌共生体双链RNA生产的遗传生物传感器
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