category
bioRxiv
date
Mar 2, 2026
slug
status
Published
summary
创新性地构建了从湿实验到基因组学的跨学科工作流程,首次在德国东北部四座污水处理厂的原始进水样本中系统验证了碳青霉烯酶产生肺炎克雷伯菌(CP-KP)的流行情况,并通过全基因组测序揭示了其基因组特征与耐药基因分布规律。
tags
测序技术
type
Post
📄 原文题目
Bridging disciplines towards wastewater-based surveillance of antimicrobial resistance: frequency, local dynamics, and genomic characteristics of carbapenemase-producing Klebsiella pneumoniae
🔗 原文链接
💡 AI 核心解读
创新性地构建了从湿实验到基因组学的跨学科工作流程,首次在德国东北部四座污水处理厂的原始进水样本中系统验证了碳青霉烯酶产生肺炎克雷伯菌(CP-KP)的流行情况,并通过全基因组测序揭示了其基因组特征与耐药基因分布规律。
📝 英文原版摘要
The World Health Organization (WHO) has designated carbapenemase-producing Klebsiella pneumoniae (CP-KP) as a critical priority pathogen due to its increasing importance for human health. As wastewater-based surveillance (WBS) is discussed as a complementary tool for classical systems regarding hazard forecasting and early-warning, we designed a "wet-lab to genomics" workflow to target CP-KP in raw influent wastewater samples to support method development processes across different scientific disciplines. The CP-KP screening workflow was set up based on membrane filtration, selective chromogenic media for selective cultivation and the modified carbapenem inactivation method (mCIM) for confirming carbapenemase-production using 33 samples from four different wastewater treatment plants in North-Eastern Germany. All samples tested positive for CP-KP, with concentrations ranging between 102 and 104 colony-forming units (cfu) per 100 ml across the sample set. As a result, 320 isolates belonged to the Klebsiella, Enterobacter, Citrobacter (KEC)- group, with the majority being identified as KP (n= 297; 93%), including n= 253 (79%) verified CP-KP. Genotypic characterization of CP-KP by PCR revealed the predominance of blaOXA-48 -related genes (n= 83) among isolates from all WWTPs. As quality parameters, colony counts for viable Escherichia coli (EC) were employed as a proxy for valid wastewater samples and extended-spectrum beta-lactamase-producing E. coli (ESBL-EC) as indicator for AMR, with cfu/100 ml ranges from 106 to 107; and 102 to 104, respectively. To verify the screening outcome, a subset of 58 CP-KP from two WWTPs were subjected to whole genome sequencing (WGS). As a result, eight different sequence types (STs), i.e., ST147 and ST273 (both: clonal group 147), ST258, S
T35, ST15, ST37, ST307, and ST485 were identified. These include clinically relevant STs clustering closest with fecal isolates from Germany when compared with Pathogenwatch-database entries. Moreover, WGS data enabled the identification of antibiotic resistance genes (ARGs), and the detection of closely related isolates within the WWTP dataset.
- 作者:NotionNext
- 链接:https://tangly1024.com/article/31848bd6-1f96-8101-9eac-d56e4999df11
- 声明:本文采用 CC BY-NC-SA 4.0 许可协议,转载请注明出处。
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