category
bioRxiv
date
Mar 21, 2026
slug
status
Published
summary
创新性地整合PacBio、Nanopore和10x Genomics多技术数据实现近染色体级组装;发现线粒体基因组异常扩增(22.7 kb)且含6.874 kb非编码控制区;鉴定2,472个D.pini特有蛋白,其中部分与植物次生代谢物处理相关;证明无需Hi-C即可利用近缘高质量基因组实现染色体级组装。
tags
测序技术
蛋白质组学
type
Post
📄 原文题目
A near chromosome-scale genome assembly of the Common pine sawfly (Diprion pini, Linnaeus, 1758)
🔗 原文链接
💡 AI 核心解读
创新性地整合PacBio、Nanopore和10x Genomics多技术数据实现近染色体级组装;发现线粒体基因组异常扩增(22.7 kb)且含6.874 kb非编码控制区;鉴定2,472个D.pini特有蛋白,其中部分与植物次生代谢物处理相关;证明无需Hi-C即可利用近缘高质量基因组实现染色体级组装。
📝 英文原版摘要
The common pine sawfly, Diprion pini, is a widespread defoliator of pine forests across Europe and Asia, with outbreaks causing substantial ecological and economic damages. However, genomic resources for this species have been limited, hindering advances in molecular ecology or pest management. Here, we present a near chromosome-level reference genome for D.pini, generated using PacBio HiFi reads, Oxford Nanopore MionION long reads, and 10x Genomics linked reads. The final assembly is organized into mostly chromosome-sized scaffolds. It spans a length of 268 Mb, comprises 81 scaffolds, and has a scaffold N50 of 18.7 Mb. BUSCO analysis (hymenoptera_odb10) indicates a high genome completeness of 97.2%. With 22,7 kb the mitochondrial genome is unusually large due to an extended non-coding control region (6,874 bp). Gene prediction identified 26,335 protein-coding genes, of which 12,769 were functionally annotated. Comparative analyses with other sawflies and Apocrita identified 2,472 proteins unique to D. pini, some of which are putatively associated with the processing of plant secondary metabolites. Notably, our genome assembly highlights that, when a closely related, high-quality reference genome is available, chromosome-scale assemblies can be generated without the need of Hi-C sequencing. The genome provides a valuable foundation for the development of improved monitoring and management strategies for D. pini outbreaks and contributes to advancing fundamental research on Hymenoptera evolution.
- 作者:NotionNext
- 链接:https://tangly1024.com/article/32a48bd6-1f96-8162-b710-e391596f5992
- 声明:本文采用 CC BY-NC-SA 4.0 许可协议,转载请注明出处。
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