category
NAR
date
Mar 24, 2026
slug
status
Published
summary
1. 构建了包含28,359个ncORFs的扩展目录(是前一版本的4倍);2. 引入翻译特征评分系统,筛选出10,127个与经典蛋白编码基因具有同等翻译证据质量的ncORFs;3. 放宽ORF长度和起始密码子限制,提升目录完整性。
tags
蛋白质组学
测序技术
type
Post
📄 原文题目
An expanded reference catalog of translated open reading frames for biomedical research
🔗 原文链接
💡 AI 核心解读
1. 构建了包含28,359个ncORFs的扩展目录(是前一版本的4倍);2. 引入翻译特征评分系统,筛选出10,127个与经典蛋白编码基因具有同等翻译证据质量的ncORFs;3. 放宽ORF长度和起始密码子限制,提升目录完整性。
📝 英文原版摘要
<span class="paragraphSection"><div class="boxTitle">Abstract</div>Non-canonical (i.e. unannotated) open reading frames (ncORFs) have until recently been omitted from reference genome annotations, despite evidence of their translation, limiting their incorporation into biomedical research. To address this, in 2022, we initiated the TransCODE consortium and built the first community-driven consensus catalog of human ncORFs, which was openly distributed to the research community via Ensembl-GENCODE. While this catalog represented a starting point for reference ncORF annotation, major technical and scientific issues remained. In particular, this initial catalog had no standardized framework to judge the evidence of translation for individual ncORFs. Here, we present an expanded and refined catalog of the human reference annotation of ncORFs. By incorporating more datasets and by lifting constraints on ORF length and start codon, we define a comprehensive set of 28 359 ncORFs that is nearly four times the size of the previous catalog. Furthermore, to aid users who wish to work with ncORFs with the strongest and most reproducible signals of translation, we utilized a data-driven framework (i.e. translation signature scores) to assess the accumulated evidence for any individual ncORF. Using this approach, we derive a subset of 10 127 ncORFs with translation evidence on par with canonical protein-coding genes, which we refer to as the primary set. This set can serve as a reliable reference for downstream analyses and validation, with a particular emphasis on high quality. Overall, this update reflects continuous community-driven efforts to make ncORFs accessible and actionable to the broader research public, and further iterations of the catalog will continue to expand and ref
ine this resource.</span>
- 作者:NotionNext
- 链接:https://tangly1024.com/article/32d48bd6-1f96-815c-8ccf-c7e345f10d8a
- 声明:本文采用 CC BY-NC-SA 4.0 许可协议,转载请注明出处。
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