category
bioRxiv
date
Feb 14, 2026
slug
status
Published
summary
创新性整合大规模遗传依赖图谱与表观遗传复合物注释,发现Set1C/COMPASS在黑色素瘤中的表观遗传脆弱性,并通过基因扰动、转录组分析和单细胞测序验证其与MYC/E2F转录程序的关联
tags
基因编辑
单细胞测序
type
Post

📄 原文题目

Systematic multivariate analysis of chromatin complex dependencies reveals Set1C/COMPASS as a melanoma-enriched epigenetic vulnerability

🔗 原文链接

💡 AI 核心解读

创新性整合大规模遗传依赖图谱与表观遗传复合物注释,发现Set1C/COMPASS在黑色素瘤中的表观遗传脆弱性,并通过基因扰动、转录组分析和单细胞测序验证其与MYC/E2F转录程序的关联

📝 英文原版摘要

Epigenetic dysregulation is a common feature of cancer and creates selective vulnerabilities arising from an increased reliance on chromatin-based mechanisms that sustain malignant transcriptional states. While many chromatin regulators are broadly required for cellular viability, others function in a context-dependent manner across distinct oncogenic settings, tissue lineages, and differentiation states. Moreover, chromatin regulators often operate within multi-subunit complexes, thus epigenetic vulnerabilities emerge from coordinated complex activities rather than single genes. Here, we integrate large-scale genetic dependency maps from human cancer cell lines with curated epigenetic complex annotations to perform a systematic, multivariate analysis of complex-level epigenetic dependencies across cancer lineages. Our analysis reveals that dependencies frequently cluster among functionally related chromatin complexes and that biologically related cancer types share similar dependency patterns, consistent with shared underlying epigenetic requirements. Focusing on melanoma, we identify multiple enriched epigenetic complex dependencies, including complexes previously associated with recurrent genetic alterations or melanocyte lineage regulation, as well as a previously unrecognized vulnerability involving the H3K4 methyltransferase complex Set1C/COMPASS. This dependency is not restricted to a specific melanoma differentiation state, but genetic perturbation of CXXC1 (a complex-specific subunit) demonstrates that sensitive melanoma cell lines require Set1C/COMPASS activity to maintain global H3K4 trimethylation (H3K4me3) and cellular proliferation. Single-cell analysis further shows that loss of H3K4me3 following CXXC1 depletion is coupled to cell-cycle blockade. Integrat
ive modeling links Set1C/COMPASS dependency to MYC- and E2F-driven transcriptional programs, which are suppressed upon complex inhibition. Together, this work combines integrative, complex-level multivariate analysis of lineage-enriched epigenetic dependencies with genetic perturbation, transcriptional profiling and single-cell analysis to uncover an enriched epigenetic vulnerability in melanoma cells.
绘制内皮细胞O-GlcNAc修饰图谱揭示CCAR1是衰老的调节因子某些新冠疫苗如何引发罕见的血栓障碍
Loading...