category
bioRxiv
date
Feb 18, 2026
slug
status
Published
summary
开发了CIERA seq技术实现调控元件互作的可控研究,揭示启动子与增强子通过不同速率限制步骤协同激活转录,发现启动子存在竞争性负调控机制,建立局部转录枢纽中调控元件协作/竞争的框架模型。
tags
测序技术
基因编辑
type
Post

📄 原文题目

Cooperative and competitive interactions among transcription regulatory elements modulate transcription output

🔗 原文链接

💡 AI 核心解读

开发了CIERA seq技术实现调控元件互作的可控研究,揭示启动子与增强子通过不同速率限制步骤协同激活转录,发现启动子存在竞争性负调控机制,建立局部转录枢纽中调控元件协作/竞争的框架模型。

📝 英文原版摘要

Transcription is modulated by interactions among transcription regulatory elements (TREs), including promoters and enhancers, but their underlying interaction specificities remain opaque. Here, we develop a Chromatin Integrated, landing pad based Enhancer Reporter Assay, CIERA seq, that interrogates regulatory interactions between target promoters and distal TREs in a controlled genomic and chromatin context. We find both promoter and enhancer TREs exhibit enhancer activities on target promoters with a specificity that depends on factors that TREs recruit. Promoters are generally enriched for factors involved in the core transcription process, whereas enhancers are enriched for pioneer factors and chromatin remodelers. Our CIERA seq assays support a model where TREs activate target promoters constrained at different rate limiting steps in transcription by supplying complementary components of the transcription regulatory machinery. An orthogonal analysis using CRISPRi datasets shows that both promoters and enhancers can positively regulate expression of neighboring genes at their native loci. However, promoters are also more prone than enhancers to exhibit negative regulatory effects, a difference that may arise from competition for limiting transcriptional machinery. Together, these findings support a framework in which promoters and enhancers act as cooperative, or competitive, regulatory elements within local transcription hubs to modulate transcription outputs.
环状挤出加速活体胚胎中远距离增强子-启动子的搜索多组学分析鉴定内在Trp53驱动的转移性乳腺癌亚型
Loading...